PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676723654
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family YABBY
Protein Properties Length: 124aa    MW: 14062.8 Da    PI: 11.0823
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676723654genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1372.3e-42210076170
      YABBY  76 kveeenlksnvekeesastsvssekl....senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                k+++++++s v+++e+ s+s+s++ +    sen  +e+pr+pp+   PekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+i fgl
  676723654   2 KQHKQHVTSSVTRKECGSSSRSTNPFsttfSENVGREAPRMPPMRPAPEKRQRVPSAYNRFIKEEIQRIKAGNPEISHREAFSTAAKNWAHFPQIRFGL 100
                78899999999999999999988877666699999********7777**************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.2E-383100IPR006780YABBY protein
SuperFamilySSF470958.12E-84594IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.5E-54995IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MKQHKQHVTS SVTRKECGSS SRSTNPFSTT FSENVGREAP RMPPMRPAPE KRQRVPSAYN  60
RFIKEEIQRI KAGNPEISHR EAFSTAAKNW AHFPQIRFGL KLDGNKKGKQ SDQTVAGQKS  120
NGYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533261e-142AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013710951.14e-75PREDICTED: putative axial regulator YABBY 2 isoform X2
RefseqXP_013710950.14e-75PREDICTED: putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB02e-70YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A078E3G04e-75A0A078E3G0_BRANA; BnaC05g06120D protein
STRINGBra018624.1-P4e-72(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.18e-59YABBY family protein